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A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the “natural environment” of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful “pipe” operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.
- Subjects:
- Biology
- Keywords:
- Computational biology Textbooks
- Resource Type:
- e-book
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e-book
The forest industry is increasingly global and every marketer of forest products should have a global perspective. As a natural resource-based industry, the forest industry has an especially high profile role in environmental protection and is increasingly involved in climate change mitigation and management. Global forests are not only important because they provide a source of industrial raw material, but also because of the various other human needs they satisfy. A forest products marketer should have a basic understanding of the role that global forests play in society. Major societal trends are impacting the external environment within which the forest industry operates. We provide an overview of global forests and a brief description of the markets for the main categories of the forest industry.
- Subjects:
- Marketing
- Keywords:
- Forest products -- Marketing Industrial management Textbooks
- Resource Type:
- e-book
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e-book
Welcome to the wonderful world of microbiology! Yay! So. What is microbiology? If we break the word down it translates to “the study of small life,” where the small life refers to microorganisms or microbes. But who are the microbes? And how small are they? Generally microbes can be divided in to two categories: the cellular microbes (or organisms) and the acellular microbes (or agents). In the cellular camp we have the bacteria, the archaea, the fungi, and the protists (a bit of a grab bag composed of algae, protozoa, slime molds, and water molds). Cellular microbes can be either unicellular, where one cell is the entire organism, or multicellular, where hundreds, thousands or even billions of cells can make up the entire organism. In the acellular camp we have the viruses and other infectious agents, such as prions and viroids. In this textbook the focus will be on the bacteria and archaea (traditionally known as the “prokaryotes,”) and the viruses and other acellular agents.
- Subjects:
- Biology
- Keywords:
- Microbiology Textbooks
- Resource Type:
- e-book
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e-book
This open source textbook is derived from many sources, initially from the Principles of Management by Carpenter, Bauer, and Erdogan, but there is abundant new content as well. It is published under a Creative Commons license and as such there is no charge ever for this textbook. The most important change from 1e is that static content was removed to make room for student-generated dynamic content. Throughout the book look for the names of contributing students in the red colored example boxes. As the term progresses, you will see new examples appear as fellow students research and summarize topics for current events, all are curated by the instructor.
- Subjects:
- Management
- Keywords:
- Strategic planning Textbooks
- Resource Type:
- e-book
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e-book
This open educational resource is designed for use by undergraduate and graduate ocean science, natural resource, fisheries and wildlife, and environmental policy students enrolled in a ten-week academic quarter. The purpose of this project is to provide students and non-law professionals with a freely accessible, clearly written guide to support engaging and effective learning. As such, the book serves as a gateway and an invitation to become a well informed, committed and involved ocean citizen as well as to explore the field beyond our course study.
- Subjects:
- Logistics and Law and Legislation
- Keywords:
- Maritime law United States Environmental policy Marine resources -- Management Textbooks
- Resource Type:
- e-book
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e-book
Labs in this book supplement the information gained in lecture, as well as providing some perspective and experience with hands-on applications of ideas in pest management. The labs are presented in week-by-week order, so the pre-labs and reading for week 1 are labeled “Pre-Lab 1” and “Week 1 Reading”. Pre-Labs are assignments to be done before lab meets, and will be due at the beginning of Lab. Complete the labs using your textbook, web resources, or the reading assigned for the week. Readings are short 1-3 page “chapters” covering background topics pertinent to the upcoming lab, particular groups of insects/arthropods, or methods used in Pest Management. This should be read before coming to Lab each week. Lab Assignments need to be printed and brought to class so that they can be completed as a group in Lab. It is sometimes helpful to read through the assignment ahead of time to get an idea of the subject matter for the week.
- Subjects:
- Laboratory Techniques and Safety and Biology
- Keywords:
- Entomology Laboratory manuals Textbooks
- Resource Type:
- e-book
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e-book
Chemical Biology & Biochemistry Laboratory Using Genetic Code Expansion Manual
- Subjects:
- Laboratory Techniques and Safety, Chemistry, Biochemistry, and Biology
- Keywords:
- Laboratory manuals Biochemistry Textbooks
- Resource Type:
- e-book
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e-book
This book is intended to provide a basic introduction to epidemiologic methods and epidemiologic thinking. After reading this book, you should be able to read an epidemiologic study, understand what the authors did and why, and identify what they found. You will also have the tools to assess the quality of that study—how good is the evidence? What are potential sources of bias, and how might those have affected the results? This book will not teach you enough to be able to design and conduct your own epidemiologic studies—that level of understanding requires several years of specialized training. However, being able to read and understand the scientific literature about human health will allow you to apply that understanding to your own work in a nuanced, sophisticated way.
- Subjects:
- Health Sciences
- Keywords:
- Epidemiology Textbooks
- Resource Type:
- e-book
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e-book
Permaculture Design is a method of land planning that can be applied at scales from the home garden to city block to village to farm. It is an ethically based whole-systems design approach that uses concepts, principles, and methods derived from ecosystems, indigenous technologies, and other time-tested practices to create sustainable human settlements and institutions. Although rooted in horticulture and agriculture, Permaculture design is interdisciplinary, touching on a wide range of subjects including regional planning, ecology, animal husbandry, appropriate technology, architecture, social justice, and international development. This open text book is derived from the content of the Massive Open Online Course “Intro to Permaculture”. The original course also included interactive mapping and design tools that accompanied this content. The course and book provide a general overview of the Permaculture design system. The book can be downloaded as a print version. However, there are many accompanying videos and content pages that are linked to throughout the text, so it is best viewed online where the links can be accessed.
- Keywords:
- Permaculture Textbooks
- Resource Type:
- e-book
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e-book
This text was designed for use in the human osteology laboratory classroom. Bones are described to aid in identification of skeletonized remains in either an archaeological or forensic anthropology setting. Basic techniques for siding, aging, sexing, and stature estimation are described. Both images of bone and drawings are included which may be used for study purposes outside of the classroom. The text represents work that has been developed over more than 30 years by its various authors and is meant to present students with the basic analytical tools for the study of human osteology.
- Subjects:
- Anthropology
- Keywords:
- Skeleton Physical anthropology Textbooks Bones
- Resource Type:
- e-book