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Results for: Affiliation Oregon State University Remove constraint Affiliation: Oregon State University Creator / Instructor O'Neil, Shawn T. Remove constraint Creator / Instructor: O'Neil, Shawn T. Resource Type e-book Remove constraint Resource Type: e-book Year 2017 Remove constraint Year: 2017

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  • e-book 
    A Primer for Computational Biology

    A Primer for Computational Biology

    A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the “natural environment” of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful “pipe” operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.

    Subjects:
    Biology
    Keywords:
    Computational biology Textbooks
    Resource Type:
    e-book