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In this textbook the focus will be on the bacteria and archaea (traditionally known as the “prokaryotes,”) and the viruses and other acellular agents.
- Subjects:
- Biology
- Keywords:
- Microbiology Textbooks
- Resource Type:
- e-book
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e-book
A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the “natural environment” of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful “pipe” operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.
- Subjects:
- Biology
- Keywords:
- Computational biology Textbooks
- Resource Type:
- e-book
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e-book
Welcome to the wonderful world of microbiology! Yay! So. What is microbiology? If we break the word down it translates to “the study of small life,” where the small life refers to microorganisms or microbes. But who are the microbes? And how small are they? Generally microbes can be divided in to two categories: the cellular microbes (or organisms) and the acellular microbes (or agents). In the cellular camp we have the bacteria, the archaea, the fungi, and the protists (a bit of a grab bag composed of algae, protozoa, slime molds, and water molds). Cellular microbes can be either unicellular, where one cell is the entire organism, or multicellular, where hundreds, thousands or even billions of cells can make up the entire organism. In the acellular camp we have the viruses and other infectious agents, such as prions and viroids. In this textbook the focus will be on the bacteria and archaea (traditionally known as the “prokaryotes,”) and the viruses and other acellular agents.
- Subjects:
- Biology
- Keywords:
- Microbiology Textbooks
- Resource Type:
- e-book
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e-book
Labs in this book supplement the information gained in lecture, as well as providing some perspective and experience with hands-on applications of ideas in pest management. The labs are presented in week-by-week order, so the pre-labs and reading for week 1 are labeled “Pre-Lab 1” and “Week 1 Reading”. Pre-Labs are assignments to be done before lab meets, and will be due at the beginning of Lab. Complete the labs using your textbook, web resources, or the reading assigned for the week. Readings are short 1-3 page “chapters” covering background topics pertinent to the upcoming lab, particular groups of insects/arthropods, or methods used in Pest Management. This should be read before coming to Lab each week. Lab Assignments need to be printed and brought to class so that they can be completed as a group in Lab. It is sometimes helpful to read through the assignment ahead of time to get an idea of the subject matter for the week.
- Subjects:
- Laboratory Techniques and Safety and Biology
- Keywords:
- Entomology Laboratory manuals Textbooks
- Resource Type:
- e-book
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e-book
Chemical Biology & Biochemistry Laboratory Using Genetic Code Expansion Manual
- Subjects:
- Laboratory Techniques and Safety, Chemistry, Biochemistry, and Biology
- Keywords:
- Laboratory manuals Biochemistry Textbooks
- Resource Type:
- e-book