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e-book
A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the “natural environment” of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful “pipe” operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.
- Subjects:
- Biology
- Keywords:
- Computational biology Textbooks
- Resource Type:
- e-book
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e-book
Welcome to the wonderful world of microbiology! Yay! So. What is microbiology? If we break the word down it translates to “the study of small life,” where the small life refers to microorganisms or microbes. But who are the microbes? And how small are they? Generally microbes can be divided in to two categories: the cellular microbes (or organisms) and the acellular microbes (or agents). In the cellular camp we have the bacteria, the archaea, the fungi, and the protists (a bit of a grab bag composed of algae, protozoa, slime molds, and water molds). Cellular microbes can be either unicellular, where one cell is the entire organism, or multicellular, where hundreds, thousands or even billions of cells can make up the entire organism. In the acellular camp we have the viruses and other infectious agents, such as prions and viroids. In this textbook the focus will be on the bacteria and archaea (traditionally known as the “prokaryotes,”) and the viruses and other acellular agents.
- Subjects:
- Biology
- Keywords:
- Microbiology Textbooks
- Resource Type:
- e-book
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e-book
Labs in this book supplement the information gained in lecture, as well as providing some perspective and experience with hands-on applications of ideas in pest management. The labs are presented in week-by-week order, so the pre-labs and reading for week 1 are labeled “Pre-Lab 1” and “Week 1 Reading”. Pre-Labs are assignments to be done before lab meets, and will be due at the beginning of Lab. Complete the labs using your textbook, web resources, or the reading assigned for the week. Readings are short 1-3 page “chapters” covering background topics pertinent to the upcoming lab, particular groups of insects/arthropods, or methods used in Pest Management. This should be read before coming to Lab each week. Lab Assignments need to be printed and brought to class so that they can be completed as a group in Lab. It is sometimes helpful to read through the assignment ahead of time to get an idea of the subject matter for the week.
- Subjects:
- Laboratory Techniques and Safety and Biology
- Keywords:
- Entomology Laboratory manuals Textbooks
- Resource Type:
- e-book
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e-book
Chemical Biology & Biochemistry Laboratory Using Genetic Code Expansion Manual
- Subjects:
- Laboratory Techniques and Safety, Chemistry, Biochemistry, and Biology
- Keywords:
- Laboratory manuals Biochemistry Textbooks
- Resource Type:
- e-book
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e-book
Anthropology is the study of humanity, in all its biological and cultural aspects, past and present. It is a four-field discipline comprised of biological anthropology, cultural anthropology, archaeology, and linguistic anthropology. The focus of this book is biological anthropology, which explores who we are from biological, evolutionary, and adaptive perspectives. We lay the foundation for this inquiry in the first four chapters by introducing the discipline of anthropology, evolutionary theory, molecular biology and genetics, and the forces of evolution. Chapters 5–8 consider evolutionary, biological, and social aspects of our closest living relatives, nonhuman primates, with whom we share millions of years of evolution. We also learn about how fossils provide material insight into our past. Chapters 9–12 describe prior hominin species and the emergence of Homo sapiens, us! Finally, the last four chapters (Chapters 13–16) explore human biological variation and the concept of race, bioarchaeology and forensic anthropology, and human biology and health in the past and present. We include further readings on osteology (Appendix A), primate conservation (Appendix B), and human behavioral ecology (Appendix C). To guide your reading, each chapter begins with learning objectives and ends with review questions and a list of key terms. Ancillary materials are available for this textbook.
- Subjects:
- Psychology and Biology
- Keywords:
- Physical anthropology Textbooks
- Resource Type:
- e-book
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e-book
Given the broad definition of biotechnology applications and products, it is easy to see how there is enormous overlap within the fields of cellular biology, microbiology, chemistry, and biomedical engineering. It is the goal of this textbook to provide foundational knowledge to begin building your biotechnology toolkit and enter an exciting career of making a difference through biotechnology. This textbook first explores the fundamentals of laboratory science and biotechnology. Unit 1 begins with a dive into the foundation of biology and chemistry by asking what is life and what are the molecules of life? The end of the unit offers a primer into laboratory science; preparing solutions and operating basic lab equipment. Unit 2 brings readers through a vital tool of biomanufacturing, understanding the growth and control of microbes. Many biotechnology products are made by harnessing the work of microbes, and this unit explores this invisible and intriguing world of microorganisms. The final unit, molecular biotechnology, offers a more in-depth look at how biological molecules such as DNA and protein are manipulated into creating useful products.
- Subjects:
- Biology
- Keywords:
- Biotechnology Textbooks
- Resource Type:
- e-book
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e-book
A Student’s Guide to Tropical Marine Biology is written entirely by students enrolled in the Keene State College Tropical Marine Biology course taught by Dr. Karen Cangialosi.Our goal was to investigate three main aspects of tropical marine biology: understanding the system, identifying problems, and evaluating solutions. Each of the sections contains chapters that utilize openly licensed material and images, and are rich with hyperlinks to other sources. Some of the most pressing tropical marine ecosystem issues are broken up into five sections: Coral Reefs and Diversity, Common Fishes to the Coral Reef, Environmental Threats, Reef Conservation, and Major Marine Phyla. These sections are not mutually exclusive; repetition in some content between chapters is intentional as we expect that users may not read the whole book.
- Subjects:
- Biology
- Keywords:
- Textbooks Marine biology
- Resource Type:
- e-book
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e-book
This is a lab manual for a college-level human anatomy course. Mastery of anatomy requires a fair amount of memorization and recall skills. The activities in this manual encourage students to engage with new vocabulary in many ways, including grouping key terms, matching terms to structures, recalling definitions, and written exercises. Most of the activities in this manual utilize anatomical models, and several dissections of animal tissues and histological examinations are also included. Each unit includes both pre- and post-lab questions and six lab exercises designed for a classroom where students move from station to station. The vocabulary terms used in each unit are listed at the end of the manual and serve as a checklist for practicals.
- Subjects:
- Laboratory Techniques and Safety and Biology
- Keywords:
- Human anatomy Laboratory manuals Textbooks
- Resource Type:
- e-book
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e-book
Conservation Biology in Sub-Saharan Africa comprehensively explores the challenges and potential solutions to key conservation issues in Sub-Saharan Africa. Easy to read, this lucid and accessible textbook includes fifteen chapters that cover a full range of conservation topics, including threats to biodiversity, environmental laws, and protected areas management, as well as related topics such as sustainability, poverty, and human-wildlife conflict. This rich resource also includes a background discussion of what conservation biology is, a wide range of theoretical approaches to the subject, and concrete examples of conservation practice in specific African contexts. Strategies are outlined to protect biodiversity whilst promoting economic development in the region.
- Subjects:
- Biology
- Keywords:
- Textbooks Conservation biology Environmental sciences
- Resource Type:
- e-book
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e-book
Quantitative Ecology introduces and discusses the principles of ecology from populations to ecosystems including human populations, disease, exotic organisms, habitat fragmentation, biodiversity and global dynamics. The book also reformulates and unifies ecological equations making them more accessible to the reader and easier to teach.
- Subjects:
- Biology
- Keywords:
- Ecology -- Mathematics Textbooks
- Resource Type:
- e-book