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Bioinformatics and Data Analysis
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2017
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e-book
The focus of this book is on using quantitative research methods to test hypotheses and build theory in political science, public policy and public administration. It is designed for advanced undergraduate courses, or introductory and intermediate graduate-level courses. The first part of the book introduces the scientific method, then covers research design, measurement, descriptive statistics, probability, inference, and basic measures of association. The second part of the book covers bivariate and multiple linear regression using the ordinary least squares, the calculus and matrix algebra that are necessary for understanding bivariate and multiple linear regression, the assumptions that underlie these methods, and then provides a short introduction to generalized linear models.The book fully embraces the open access and open source philosophies. The book is freely available in the SHAREOK repository; it is written in R Markdown files that are available in a public GitHub repository; it uses and teaches R and RStudio for data analysis, visualization and data management; and it uses publically available survey data (from the Meso-Scale Integrated Socio-geographic Network) to illustrate important concepts and methods. We encourage students to download the data, replicate the examples, and explore further! We also encourage instructors to download the R Markdown files and modify the text for use in different courses.
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e-book
A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the “natural environment” of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful “pipe” operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.
- Subjects:
- Biology
- Keywords:
- Computational biology Textbooks
- Resource Type:
- e-book
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e-book
Principles of Microeconomics is an adaptation of the textbook, Microeconomics: Markets, Methods, and Models by D. Curtis and I. Irvine, which provides concise yet complete coverage of introductory microeconomic theory, application and policy in a Canadian and global environment. This adaptation employs methods that use equations sparingly and do not utilize calculus. The key issues in most chapters are analyzed by introducing a numerical example or case study at the outset. Students are introduced immediately to the practice of taking a data set, examining it numerically, plotting it, and again analyzing the material in that form. The end-of-chapter problems involve numerical and graphical analysis, and a small number of problems in each chapter involve solving simple linear equations (intersecting straight lines). However, a sufficient number of questions is provided for the student to test understanding of the material without working through that subset of questions. This textbook is intended for a one-semester course, and can be used in a two-semester sequence with the companion textbook, Principles of Macroeconomics. The three introductory chapters are common to both textbooks.
- Subjects:
- Economics
- Keywords:
- Microeconomics Textbooks
- Resource Type:
- e-book
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Courseware
This course discusses the evolution and role of urban public transportation modes, systems, and services, focusing on bus and rail. It covers various topics, including current practice and new methods for data collection and analysis, performance monitoring, route design, frequency determination, vehicle and crew scheduling, effect of pricing policy and service quality on ridership.
- Subjects:
- Transportation
- Keywords:
- Urban transportation -- Management Local transit Urban transportation -- Planning
- Resource Type:
- Courseware
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e-book
In the era of Internet of Things (IoT) and with the explosive worldwide growth of electronic data volume, and associated need of processing, analysis, and storage of such humongous volume of data, several new challenges are faced in protecting privacy of sensitive data and securing systems by designing novel schemes for secure authentication, integrity protection, encryption, and non-repudiation. Lightweight symmetric key cryptography and adaptive network security algorithms are in demand for mitigating these challenges. This book presents some of the state-of-the-art research work in the field of cryptography and security in computing and communications. It is a valuable source of knowledge for researchers, engineers, practitioners, graduates, and doctoral students who are working in the field of cryptography, network security, and security and privacy issues in the Internet of Things (IoT). It will also be useful for faculty members of graduate schools and universities.